rs227979333 SNP Detail

Summary

• ID
  rs227979333
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:111502897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGTAAAA TGGGTGTAAA
  AATTCCTCAG TATTCAAGGT CTTCTTAAAG CTGTAGGATA TTAGAATCTG ATAAATGGCG
  TGATTACGAG TACTTCTTAT TGTAAATAAA TAAAATTAAT TTAAAATTTT TTACAAAGCA
  CTTAGCTGGG TGTGCTAGTA CCTGTCTGTA AGCCCCTACT AGGGAGGTTG AGGCATGAAG
  M
  TAGCTATGAG TTTGGGGCCA GGCTGGGCTA CATACTGAAA GGGCATCAAA GTGATTCTTA
  GAAGTTGTCC ATAATAACAG CACTAAAAAT TAAAAGCAAC ACTAGCATAA GCTTTTATAT
  TTTCATCTCC TTTGTGGCTG TCCTGGAACT TGTTATATAG GCTAGGCTAG CCTGCCTCTG
  CCTCTGGAGT GCTAGGATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387360239	MGP_WTSI_12_112774674	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227979333					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387360239	MGP_WTSI_12_112774674	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:111502897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5150	CpG island 5150	984 bp proximal
Eif5	eukaryotic translation initiation factor 5	1638 bp upstream
Gm56529	predicted gene, 56529	895 bp upstream
Gm56546	predicted gene, 56546	554 bp downstream
Gm58608	predicted gene, 58608	1553 bp upstream
Rr403512	regulatory region 403512	1364 bp upstream
Rr473211	regulatory region 473211	919 bp distal
Rr473212	regulatory region 473212	418 bp distal
Rr473213	regulatory region 473213	1063 bp proximal
Tssr115316	transcription start site region 115316	803 bp downstream
Tssr115317	transcription start site region 115317	417 bp downstream
Tssr115318	transcription start site region 115318	352 bp downstream
Tssr115319	transcription start site region 115319	729 bp upstream
Tssr115320	transcription start site region 115320	1686 bp upstream
Tssr115321	transcription start site region 115321	1801 bp upstream
Tssr115322	transcription start site region 115322	1868 bp upstream
Tssr117828	transcription start site region 117828	1454 bp downstream