rs227980440 SNP Detail

Summary

• ID
  rs227980440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47719930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGAAAAG CCTTTGCGGT
  GGGGAAAGCC GAGCCTGCCA GGGGGCGAGC GCTGCCAGAG GGCGGTGCTC TCGGGCGCGC
  CACCCTGACG ATACCCACCC CGCCCCCAAC CCCACCAGGG AAGCTGCTCG GGAAGGCAGC
  TGGCACCGCA ACTCCCAAAG GCAGTGGCGA GCGGAAGCGC GCCCCCCTCA GGCCCCTCCA
  R
  GGGCCTAACA TCGTTTTTTC CATGGACGCC ACCCCACGGC TGGCGGCCGC GCGCGCGTAG
  CCGAGCCCTG GAGCGCGCCG GCCAGCCCTG CCAATCACGA GCCGCGCCCG CCTCCCGCCA
  GGCCCCGCTC CGCCCCGTGG CCCAGGCCCG CGGCCCGCCG CGCACGCGCA GTCGGAGCTG
  TACGGAGCAC ATCCGCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402629547	MGP_WTSI_19_47805981	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227980440					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402629547	MGP_WTSI_19_47805981	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47719930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11035	CpG island 11035	within coordinates
Gm58934	predicted gene, 58934	within coordinates
Rr370527	regulatory region 370527	217 bp downstream
Rr406020	regulatory region 406020	447 bp upstream
Rr549123	regulatory region 549123	within coordinates
Rr549124	regulatory region 549124	273 bp distal
Rr549125	regulatory region 549125	132 bp distal
Rr549126	regulatory region 549126	4 bp distal
Rr549127	regulatory region 549127	58 bp proximal
Rr549128	regulatory region 549128	202 bp proximal
Sfr1	SWI5 dependent recombination repair 1	229 bp upstream
Tssr156884	transcription start site region 156884	252 bp upstream
Tssr156885	transcription start site region 156885	283 bp upstream
Tssr156886	transcription start site region 156886	1454 bp upstream