rs227986985 SNP Detail

Summary

• ID
  rs227986985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:6098189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCAGCCT GGCGCTAACC
  GGGGCAGTGG TGGCTCATGC CTACTACCTC AAACACCAGT TCTACCCCAC TGTAGTGTAT
  TTGACCAAGT CCAGCCCCAG CATGGCAGTG AGTTCAGGGC TCAGGGAAGA AGGAATGCCC
  GGGGAGGGAA GGAGGGGCAG AAGTGGGGCT ACATGTCATA GAAGTAGGAG AGAAATAGCC
  Y
  TGGGCCGCCT GACTTGGAAT TATCTATGAC AGTCTTGGGG ACCTGTCAGA ATGATTAGCC
  CCAGGCAGGG GAAAGCAGAA AATAACCTCA AACCACGACC TTTCCTCACC CCCAGGTCCT
  GTACATCCAG GCCTTTGTCC TTGTCTTCCT CTTGGGCAAG GTGATGGGCA AGGTGTTCTT
  CGGGCAGCTG AGGGCAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401668121	MGP_WTSI_19_6048159	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227986985					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401668121	MGP_WTSI_19_6048159	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6098189 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi10491	CpG island 10491			426 bp distal
D530017H19Rik	RIKEN cDNA D530017H19 gene			730 bp upstream
Gm59262	predicted gene, 59262			1670 bp downstream
Rr370438	regulatory region 370438			1467 bp downstream
Rr543277	regulatory region 543277			1487 bp distal
Rr543279	regulatory region 543279			1148 bp distal
Rr543280	regulatory region 543280			1045 bp distal
Rr543281	regulatory region 543281			741 bp distal
Rr543282	regulatory region 543282			830 bp distal
Rr543283	regulatory region 543283			767 bp distal
Rr543284	regulatory region 543284			240 bp distal
Syvn1	synovial apoptosis inhibitor 1, synoviolin			Intron
				Noncoding-Transcript-Variant
Tssr154539	transcription start site region 154539			1514 bp downstream
Tssr154540	transcription start site region 154540			1118 bp downstream
Tssr154541	transcription start site region 154541			1079 bp downstream
Tssr154542	transcription start site region 154542			1056 bp downstream
Tssr157817	transcription start site region 157817			1128 bp upstream
Tssr157818	transcription start site region 157818			735 bp upstream