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rs227987161 SNP Detail
Summary
  • ID
    rs227987161
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr17:26727234 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCGTCCAGC AGCACCACGG
CGTGGTAGGC TCCGGCCAGC AGGCGGCCAC GCAGTTCAGC GTTGGGCACG ATATGCTCCA
GGCCCATGGC GCCCTTGGCG CGGCGCCGCA CGATGGTGCT GAAGCGCACG TTCACTGAGC
CCGCGATGTG GCCGGCGTTG AAAGCGAAGA AGGAGCGACA ATCCAACAAC AGGCACTGCG
M
GGCGCCCTCT CGCAGCAGCG CGCGCAGCCC CCCGGCGTCC AGGATGCCCA CCTCCATCAC
CATGGCCAGC CCCAGCGACC CCAGCGTGCC CGTTCTGCGG TTCTCCAGAA AAAGTCGGTC
GATCTTGTGC GGTGTCCTGT GGCCCTAAGT CCCCAAGTGC TCGCTGCTCC TAATCTGGCT
TCACCGCGCT TTCCTCCCGC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss397901208 MGP_WTSI_17_26645205 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227987161 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss397901208 MGP_WTSI_17_26645205 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:26727234 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi8810 CpG island 8810 910 bp distal
Cpgi8811 CpG island 8811 within coordinates
Dusp1 dual specificity phosphatase 1 within coordinates
Gm56886 predicted gene, 56886 276 bp upstream
Rr339410 regulatory region 339410 within coordinates
Rr405112 regulatory region 405112 172 bp upstream
Rr405113 regulatory region 405113 544 bp upstream
Rr406958 regulatory region 406958 592 bp proximal
Tssr5044 transcription start site region 5044 691 bp upstream
Tssr5045 transcription start site region 5045 1203 bp downstream
Tssr5046 transcription start site region 5046 1256 bp downstream
Tssr5047 transcription start site region 5047 1265 bp downstream
Tssr143230 transcription start site region 143230 1889 bp downstream
Tssr143231 transcription start site region 143231 759 bp downstream
Tssr143232 transcription start site region 143232 388 bp upstream
Tssr143233 transcription start site region 143233 437 bp upstream
Tssr143234 transcription start site region 143234 489 bp upstream
Tssr143235 transcription start site region 143235 1441 bp upstream
Tssr143236 transcription start site region 143236 1466 bp upstream
Tssr146943 transcription start site region 146943 1990 bp upstream
Tssr146944 transcription start site region 146944 1865 bp upstream
Tssr146945 transcription start site region 146945 1802 bp upstream
Tssr146946 transcription start site region 146946 1744 bp upstream
Tssr146947 transcription start site region 146947 1723 bp upstream
Tssr146948 transcription start site region 146948 1697 bp upstream
Tssr146949 transcription start site region 146949 1629 bp upstream
Tssr146950 transcription start site region 146950 1088 bp upstream
Tssr146951 transcription start site region 146951 601 bp upstream
Tssr146952 transcription start site region 146952 53 bp upstream
Tssr146953 transcription start site region 146953 13 bp upstream
Tssr146954 transcription start site region 146954 203 bp downstream
Tssr146955 transcription start site region 146955 604 bp downstream
Tssr146956 transcription start site region 146956 1234 bp downstream
Tssr146957 transcription start site region 146957 1299 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory