rs227988105 SNP Detail

Summary

• ID
  rs227988105
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3031145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTCTCG CCATATTCCA
  GGTCCTACAG TGTGCATTTC TCATTTTTCA CGTTTTTCAG TGATTTTGTC ATTTTTCAAG
  TTGTCAAGTG GATGTTTCTC ATTTTCCTTG ATTTTCACTT TTCTTGCCAT ATTCCAAGTC
  TTACAGGGGC ATTTCTCATT TTTCACGTTT TCAGTGATTT TGTCATTTTC AATTTGTCAA
  S
  TGCATGTTTC TCATTTTCCA TGATTTTCAG TTTTTTTGCC ATATTCCATG TCCTACAGGG
  GAAATTTCTA TATTTTCCAC CTTTTTCAGT TTTCCTCGCC ATATTTCATG TCCTAAAGTG
  TGTATTTCTC ATTTTCCGTG ATTTTCAGTT TTCTTGCCAT ATTCCAGGTC CTACAGTGTG
  CATTTCTCAT TTTTCACGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	C57BL/6J	PWK/PhJ	ST/bJ
ss376472670	MGP_WTSI_9_3031145	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	C57BL/6J	PWK/PhJ	ST/bJ
rs227988105					SNP	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376472670	MGP_WTSI_9_3031145	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3031145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21325	CpG island 21325	1435 bp distal
Cpgi21326	CpG island 21326	742 bp proximal
Cpgi21327	CpG island 21327	1206 bp proximal
Rr673610	regulatory region 673610	1105 bp distal
Rr673611	regulatory region 673611	within coordinates
Rr673612	regulatory region 673612	986 bp proximal
Rr673613	regulatory region 673613	1646 bp proximal
Tssr83588	transcription start site region 83588	1750 bp downstream
Tssr83589	transcription start site region 83589	1469 bp downstream
Tssr83590	transcription start site region 83590	969 bp downstream
Tssr83591	transcription start site region 83591	48 bp downstream
Tssr83592	transcription start site region 83592	31 bp downstream
Tssr83593	transcription start site region 83593	739 bp upstream
Tssr83594	transcription start site region 83594	854 bp upstream
Tssr83595	transcription start site region 83595	1202 bp upstream
Tssr83596	transcription start site region 83596	1290 bp upstream
Tssr88023	transcription start site region 88023	1725 bp upstream
Tssr88024	transcription start site region 88024	766 bp downstream