rs227989435 SNP Detail

Summary

• ID
  rs227989435
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70403416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGAGTGTG GAATACCACA TGAGTATAGT ATAGAATAGA
  GTTTATTTAG GGCATGGGGA GGGGAGTTGA GGAGGTAATA GAGACAGAGA GACACACACA
  S
  AGATAATAGA AGAGTAGAGG AGTACAGGCT GGCTATGAAC ACGTGGGGGG GGGGAGAAGG
  GGCAGAGGGG AAAAAGGGTA AGAGAACAAG AAGAGAGCG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323735917	CHEV_11_70326092	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs227989435					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70403416 () rs orientation: forward

Symbol	Name	Function Class
Rr235913	regulatory region 235913	985 bp proximal
Rr251336	regulatory region 251336	within coordinates
Tm4sf5	transmembrane 4 superfamily member 5	1407 bp downstream
Tssr102721	transcription start site region 102721	1741 bp downstream
Tssr102722	transcription start site region 102722	1515 bp downstream
Tssr102723	transcription start site region 102723	1489 bp downstream
Tssr108976	transcription start site region 108976	1408 bp upstream
Vmo1	vitelline membrane outer layer 1 homolog (chicken)	926 bp downstream