rs227990012 SNP Detail

Summary

• ID
  rs227990012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:48812759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGACTGAC CAATAACGAT
  AGCTAAATTT TAGAACTTGA TGGTTGGTAA AGGAAACAGA ATAGTCATGT ACCTCTTATT
  AATAGGTATT AATTAATAGG TATTCTAGAT ATGTGTCACT GAGTTATTTC ACTGTTGCAC
  AAACATGGTA AAAGACCACC AATACACATT TATAAGGCAT GGCCTAAATA TGATAAGAGA
  Y
  TTGGTAAACA ACAGCTGTAT GAAGATACTT CTGGTTTTAC ATGGCATATA CTATTAAGCT
  TGTGTTTTGA CTATGAATAC AAGTGGTAAT GATAAAAGTA TGGATCAGTA AACAAATGAA
  TCATTAGTAG TTTATTTGTG CCATCCATAA CAGTATGTGC TATACTTTCA TATGCTGCTG
  CTGTGTAGTT ATGACACTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396218232	MGP_WTSI_16_48992509	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227990012					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396218232	MGP_WTSI_16_48992509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:48812759 () rs orientation: forward

Symbol	Name	Function Class
Cip2a	cell proliferation regulating inhibitor of protein phosphatase 2A	1789 bp upstream
Cpgi8305	CpG island 8305	1099 bp proximal
Dzip3	DAZ interacting protein 3, zinc finger	within coordinates
Rr391755	regulatory region 391755	943 bp upstream
Rr516660	regulatory region 516660	1909 bp distal
Rr516661	regulatory region 516661	25 bp proximal
Rr516662	regulatory region 516662	1535 bp proximal
Rr516663	regulatory region 516663	1803 bp proximal
Tssr138707	transcription start site region 138707	1801 bp upstream
Tssr141318	transcription start site region 141318	1535 bp downstream
Tssr141319	transcription start site region 141319	1685 bp downstream