rs227990495 SNP Detail

Summary

• ID
  rs227990495
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40517898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGCCTG ACTTCCGATT
  CCGGGATTTT ACTATTTCAA ATGGAAACTC AAGCAAGATG CAGAAAAGCA CTTTGAGCGC
  AGCTCATCAC CCGACTCTTG TGGGCCTAGT GGGGGATGGT CCGGGTCCGC AGCAGTCTCC
  TGGGAACTCT GACAGCGATG AAATGGTCTC CTGAGAGCCC AGGCAGATGA GAGGACTTAA
  M
  GGGCCCCAAG ACACACAGTT GGCATTTGTG ATCAGCTGGC TTTCGCTGGG GACTTTGCCA
  GTGGCCTAAC CTTCCTGCCA AGAAACTGTG AGGGCGGAGG GCAGGGGCTC CAGGAGGGGA
  GCAGTAACTG GAAGCACAAA GTTTATGGAA GGAGACTGAG ATTTCTTTGT GCCCTGCTAG
  ATGGGCGAGG CATTAGGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss393745580	MGP_WTSI_15_40486048	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227990495					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss393745580	MGP_WTSI_15_40486048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40517898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	within coordinates
Gm63080	predicted gene, 63080	within coordinates
Rr501588	regulatory region 501588	within coordinates
Rr501589	regulatory region 501589	544 bp proximal
Rr501590	regulatory region 501590	1107 bp proximal
Tssr4586	transcription start site region 4586	793 bp upstream
Tssr131170	transcription start site region 131170	379 bp upstream
Tssr131171	transcription start site region 131171	410 bp upstream
Tssr131172	transcription start site region 131172	492 bp upstream
Tssr131173	transcription start site region 131173	518 bp upstream
Tssr131174	transcription start site region 131174	567 bp upstream
Tssr131175	transcription start site region 131175	706 bp upstream
Tssr131176	transcription start site region 131176	757 bp upstream
Tssr131177	transcription start site region 131177	806 bp upstream
Tssr131178	transcription start site region 131178	835 bp upstream
Zfpm2	zinc finger protein, multitype 2	540 bp upstream