rs227994119 SNP Detail

Summary

• ID
  rs227994119
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:4525107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGAAGCAG GCTACATCAC
  TACCCAAACC CTCCCATCCA GCCCTTCCTG GATACCTCAC CTCTAGCGGC AGGTTCCCCT
  GCCCACTGGT CCCCAGTCCT CTCCCTGCAG CACCCACTCT GGACCGAAGG TTCCCTACCC
  CACTTCTTAG CTCACAGCTC ACCGCATCGC TGCTCCTGAA GAGAGAGAAA CCGTGAAGAG
  R
  AAATCACTGA TGGTGGTCCC CTGACTCTTG AACCCCAGGA GTCTGATTCC CAAATTCTTA
  CCTCATTTCT ACAGAAATCC AACCACCCTT GCCTCCTACT CTCTCAGGAC AAGTATCCAA
  CCTGGTTGCA CCCTCAAGAC CCACCGCACC TCTCCCTGTT GAGGTCTCCA CCCCAAGGCT
  ACGAAGATTC ACATACTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370565885	MGP_WTSI_7_4473710	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227994119					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370565885	MGP_WTSI_7_4473710	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4525107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	188 bp distal
Dnaaf3	dynein, axonemal assembly factor 3	825 bp downstream
Rr641975	regulatory region 641975	658 bp distal
Rr641976	regulatory region 641976	410 bp proximal
Tnni3	troponin I, cardiac 3	within coordinates
Tssr64335	transcription start site region 64335	1626 bp downstream
Tssr64336	transcription start site region 64336	432 bp downstream
Tssr64337	transcription start site region 64337	263 bp downstream
Tssr70484	transcription start site region 70484	205 bp upstream
Tssr70485	transcription start site region 70485	319 bp downstream
Tssr70486	transcription start site region 70486	691 bp downstream
Tssr70487	transcription start site region 70487	708 bp downstream