rs227996872 SNP Detail

Summary

• ID
  rs227996872
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145743839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTGAC TTTGTCCATT
  TTTTCCATTT GTATAAGCAT CATAACCTCA ACTTCCCTCA AAAATATATT TTACTGTTCA
  TTTCATGGCA TATTTTGCCA AAGTAAGTGA ATAGAGGGTA GAAGCTGAAC TCATGGTGTC
  AAACTCCACC TTTCTACCAT AGTAGCAGTT ATATATATAC TTTCGGGCCT GTCATACCCA
  Y
  GTTTACAATT ATTCATTGTA TAATTTACTT CATCAGGCTT AGAGACAAAG CTTGGCGAGG
  AGCCACTGGG ACTACCTGCT CTTTCAACCA TTTGCTTTCT TCTCCACCAC ACCTGGCCCT
  CAGGTTTGGC CAAGGAATTC CCAAGACACC TGCGGAGCAA CTGAGTCCCA AAGGAGTTGG
  GGATGTGAGT CTGCTGTAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356015674	MGP_WTSI_2_145727655	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227996872					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356015674	MGP_WTSI_2_145727655	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145743839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12364	CpG island 12364	1111 bp proximal
Gm74898	predicted gene, 74898	within coordinates
Gm74902	predicted gene, 74902	1484 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	180 bp upstream
Rr55740	regulatory region 55740	961 bp proximal
Rr63594	regulatory region 63594	1057 bp distal
Rr374012	regulatory region 374012	181 bp downstream
Rr397366	regulatory region 397366	1113 bp upstream
Tssr20600	transcription start site region 20600	1303 bp upstream
Tssr20601	transcription start site region 20601	1315 bp upstream
Tssr20602	transcription start site region 20602	1971 bp upstream