rs227999910 SNP Detail

Summary

• ID
  rs227999910
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122825808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTGTGCC TGACACTTTT
  GTCATGTAAG ATACCTAGAC TCATGTTTAA AATCTTTTGA TATTGCTGTT GAAGCATGCA
  TTGATCCTGA AGTTCCACCC ATCATCCCAT TAGGATATTG TTTTATTCTA TGTGAGATAC
  AAAGTCTAAT GTAAAAAGCC GAAGACGATG GGGCCAGGTA CGTACTGCAC ACCTGCACAC
  K
  CCTAATCCCA GCAGGAGATG GCAAGGCCCT GTGTGGAAAA CAGAAAGGAA TTCAAGACCT
  TAAGAAGACT CCTTGGAGGC AGAGGCACAC TGATCTCTGA GTTTCAGGCC AGTTTGGTCT
  ACAGAATGAG TTTCAGGACA GCCAGGGCTA CTGTCTTGAA AAAACAGTAA ACCAAGCAAC
  CAAGCAACCA ACCAACCAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369914763	MGP_WTSI_6_122798867	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs227999910					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369914763	MGP_WTSI_6_122798867	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122825808 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	873 bp downstream
Tssr58710	transcription start site region 58710	653 bp downstream
Tssr58711	transcription start site region 58711	1608 bp upstream
Tssr58712	transcription start site region 58712	1726 bp upstream
Tssr58713	transcription start site region 58713	1782 bp upstream
Tssr62966	transcription start site region 62966	1063 bp upstream
Tssr62967	transcription start site region 62967	1018 bp upstream
Tssr62968	transcription start site region 62968	970 bp upstream
Tssr62969	transcription start site region 62969	650 bp upstream
Tssr62970	transcription start site region 62970	630 bp upstream
Tssr62971	transcription start site region 62971	570 bp upstream
Tssr62972	transcription start site region 62972	470 bp upstream
Tssr62973	transcription start site region 62973	409 bp upstream
Tssr62974	transcription start site region 62974	323 bp upstream
Tssr62975	transcription start site region 62975	238 bp upstream
Tssr62976	transcription start site region 62976	149 bp upstream
Tssr62977	transcription start site region 62977	91 bp upstream
Tssr62978	transcription start site region 62978	37 bp upstream
Tssr62979	transcription start site region 62979	4 bp upstream
Tssr62980	transcription start site region 62980	within coordinates
Tssr62981	transcription start site region 62981	19 bp downstream
Tssr62982	transcription start site region 62982	180 bp downstream
Tssr62983	transcription start site region 62983	637 bp downstream
Tssr62984	transcription start site region 62984	707 bp downstream
Tssr62985	transcription start site region 62985	750 bp downstream
Tssr62986	transcription start site region 62986	1061 bp downstream
Tssr62987	transcription start site region 62987	1191 bp downstream
Tssr62988	transcription start site region 62988	1259 bp downstream
Tssr62989	transcription start site region 62989	1418 bp downstream
Tssr62990	transcription start site region 62990	1464 bp downstream
Tssr62991	transcription start site region 62991	1491 bp downstream
Tssr62992	transcription start site region 62992	1516 bp downstream
Tssr62993	transcription start site region 62993	1610 bp downstream
Tssr62994	transcription start site region 62994	1716 bp downstream
Tssr62995	transcription start site region 62995	1833 bp downstream
Tssr62996	transcription start site region 62996	1893 bp downstream