rs228006614 SNP Detail

Summary

• ID
  rs228006614
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:62248190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGTAGG ACTGGGCAGG
  CTCACATGCC ATTCATTAAA TCCAGTGTGA ACGTGTTGGG AAAGAATTGA ATGCTCATGG
  CACATGAATT TAATTCATCT ACCCAAATCA TGGAACAGTG CATTGCTTTC TATTTATTTG
  AGTCACCATG TCCCATGTTT GTGTTTTATT ATTATTAATC AATGAATGTT TTTGACAAAC
  K
  AATAGCTTAG AACTTGTGTG AGGGTGTGAG GTATTGTGCC CTGATATGGG CCTAGCAGTT
  GTCCTTACTC AATATTCTTG TTTTCTACCG TTGATCTAAA GGAAAAGGGA CAATCAGAGT
  GGAATGTTTT GGAGTAGATC TAAGCAATAG AGCAGTCACA TTCCCCCCCA CTTTTTTTTC
  CTTGATTAAT CAGACGACTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358176041	MGP_WTSI_3_62144691	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228006614					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358176041	MGP_WTSI_3_62144691	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62248190 () rs orientation: forward

Symbol	Name	Function Class
9330121J05Rik	RIKEN cDNA 9330121J05 gene	237 bp upstream
Arhgef26	Rho guanine nucleotide exchange factor 26	within coordinates
Cpgi13214	CpG island 13214	358 bp distal
Gm33923	predicted gene, 33923	622 bp downstream
Rr77681	regulatory region 77681	within coordinates
Rr375082	regulatory region 375082	514 bp upstream
Tssr29350	transcription start site region 29350	1757 bp downstream
Tssr29351	transcription start site region 29351	1732 bp downstream
Tssr29352	transcription start site region 29352	1159 bp downstream
Tssr29353	transcription start site region 29353	711 bp downstream