rs228012729 SNP Detail

Summary

• ID
  rs228012729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88374742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTAAGA TAGATAAAAC
  ATTACAAAGC TTCAGAAAGG GAGGGAGAAA AGTGAATTCT AAGGGACGCA CAGGAGAGGT
  AAGTCTACGG TATTGTGCTA TGTGTAAATT ACAGATTTTT TTCTTTTTTT CTTTTTTTCT
  TTTTCTTTTT TTTTTTCTTT TTTCTTTCTT GGTTTTTTGA GACAGAATTT CTCTGTGTAG
  Y
  CCTGGCTGTC CTGGAACTCA TTCTGTAGAT CAGGCTGGCC TCTAACTCAG AAATCCGCCT
  GCCTCTGCCT CCCACGTGCT GGGATTAAAG GCATTCGCCA CCACTGTTGG CAAATCACCC
  TTCTAGATGT CAGACATCTC CTGCCATTTA AATAATAACC TATCATATGA TGTACAATTG
  CTGGGTTTTT TTTTTTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399379390	MGP_WTSI_17_88466654	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228012729					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399379390	MGP_WTSI_17_88466654	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88374742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9636	CpG island 9636	669 bp distal
Rr333911	regulatory region 333911	259 bp proximal
Rr333912	regulatory region 333912	1059 bp proximal
Rr333913	regulatory region 333913	1859 bp proximal
Rr340317	regulatory region 340317	within coordinates
Rr344409	regulatory region 344409	949 bp proximal
Rr370332	regulatory region 370332	727 bp downstream
Rr405528	regulatory region 405528	914 bp downstream
Tssr149795	transcription start site region 149795	1585 bp upstream
Tssr149796	transcription start site region 149796	1483 bp upstream
Tssr149797	transcription start site region 149797	1441 bp upstream
Tssr149798	transcription start site region 149798	1321 bp upstream
Tssr149799	transcription start site region 149799	1227 bp upstream