rs228013434 SNP Detail

Summary

• ID
  rs228013434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118785411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACAGAGT CCCATGCGTA
  CACAGTAGCA CAACCTGATA TTTCAAGCTC TGTTAGATAT TAACATTTTA TTGTCACCTC
  TCTTACCGTC TTAACCTTTT GTTTTATTTT CTGTTGACAC ACATCACCAT GCATATTTCT
  TGGGGTATAA TGTGATATTT CGATCCCTGT ATTTAATGTG TAATGACCAA ATCAATGTAA
  Y
  GAGCATATTT GTCACTTTAA GCATGTGTCA TTTCTTTTGG GGGAGTGCAC CCACAATTTT
  CTCTTGAGGC CAGGAATGTA GCTTAGTTGC CAGAGTGCTT GCCTAGTGGG CATGAAGCTC
  TGTTTTGAAC CAGTGCCATA CAAGACCTAG CCCCTTAGTT CAAGTCTTTA GTCCTAGTAC
  TTGGGAAGTG AGGATAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372909558	MGP_WTSI_7_126329702	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228013434					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372909558	MGP_WTSI_7_126329702	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118785411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	1395 bp distal
Cpgi19632	CpG island 19632	629 bp distal
Gm73654	predicted gene, 73654	within coordinates
Gpr139	G protein-coupled receptor 139	1650 bp upstream
Rr381384	regulatory region 381384	within coordinates
Rr654600	regulatory region 654600	1266 bp distal
Rr654601	regulatory region 654601	125 bp distal
Rr654602	regulatory region 654602	142 bp proximal
Rr654603	regulatory region 654603	379 bp proximal
Tssr74477	transcription start site region 74477	1642 bp upstream
Tssr74478	transcription start site region 74478	1616 bp upstream
Tssr74479	transcription start site region 74479	1569 bp upstream