rs228014393 SNP Detail

Summary

• ID
  rs228014393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158099694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTCCCA TCTGGATTCT
  CTTTCTCGCA AGGCACACTA TGCCTGCTTT CCCTACTGGA AGGCCATCCT GTCCTCACAG
  TAAGCTAGGG GCGAAGGTGA TAGTCCCCCC CCACCCCCCA CCACCACTCT ATAGGAGAGG
  AAACCGAGGC ACAGAGAAGC ACAGAGAGGC TGAGACCAGC CTTAAAGAGT AGCTGAGATG
  Y
  CAAGGACAAG ACTCCAGAAT TAGAGCACTA AAAAAGTACC CCTGCAGCCT GGGATGGGGG
  ACACCTCCAA AGGTCCCGTT TTTTAAACAA TTTACTACGG ATACAACCAA AGGGATAGGA
  ACTAGAGACA GGGAGTCTCC GTGTGGTCAC CACCCAGCTT GAAAGAAAGC CTTACATGAG
  GCGAGGAGGA CGCAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356277760	MGP_WTSI_2_158083510	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228014393					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356277760	MGP_WTSI_2_158083510	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158099694 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	320 bp upstream
Cpgi12591	CpG island 12591	112 bp proximal
Gm34571	predicted gene, 34571	within coordinates
Rr568712	regulatory region 568712	484 bp distal
Rr568713	regulatory region 568713	260 bp proximal
Rr568714	regulatory region 568714	958 bp proximal
Rr568715	regulatory region 568715	1223 bp proximal
Tssr727	transcription start site region 727	444 bp upstream
Tssr21302	transcription start site region 21302	291 bp upstream
Tssr21303	transcription start site region 21303	429 bp upstream
Tssr21304	transcription start site region 21304	451 bp upstream
Tssr21305	transcription start site region 21305	463 bp upstream
Tssr21306	transcription start site region 21306	486 bp upstream
Tssr27222	transcription start site region 27222	1171 bp downstream