rs228016697 SNP Detail

Summary

• ID
  rs228016697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:74878460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCTAACT TTGCTATAAT
  TTATGAGTTA TGTAATTATT TTATATAATA TATAATTTAT ATATTATGTA TCAGTTTATA
  TAGTATAATA AATATAGTAT GTTTATATAG TACATGTAGC ATATATTAGT TTATATAATA
  TAGATTAGCT TATATATTAG TTTATATACT ATATGATGAT ATACATTATA TATTTTATAA
  Y
  ATAATACATA ATTTATATAA TATATAAACC AATATATAAT ATTATATAGT CATAATAATT
  TATGTGATTT TTAATATATT TATAAATATG TAAATATAAT TTATAGAATC TATAATTTCC
  CTGTTTCTCC GAATGTCATA CAGGTGACTT TTCAGCCTGA GTGAAGTTTC CACACAGTTT
  CATTTCCTCT GTCTAAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss380915840	MGP_WTSI_10_74505373	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs228016697					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380915840	MGP_WTSI_10_74505373	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:74878460 () rs orientation: forward

Symbol	Name	Function Class
Gm66084	predicted gene, 66084	423 bp upstream
Rab36	RAB36, member RAS oncogene family	within coordinates
Rr433915	regulatory region 433915	1898 bp proximal