rs228017100 SNP Detail

Summary

• ID
  rs228017100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33597570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGGGCAGGA GGACGCACAC GCGCACGGTC
  GCGTGCACAA TCACACGCGC GCACTCGGAC ACTTTCAGCC CGGCGCGCGC ACAGGCTGTA
  AGAAAAGGGC TGCCTGGTGG GTGCAACCGG AGACGCTAGA GCCTAGAGCT TTTCTCTCTC
  Y
  CCCCCCCCCC CCCCCGCTTT CAAAGTTCTC AGCCCCTGTA GAGCAACTTT CCTTTAGTTG
  TGGGTTTCTT GGGGGGGGGG GGGATCTGTT TTGTCTTTTA AGTTCATGTA AAAATTGATC
  TTTTCCTAGT AAAGTAATAG CTAGAAATGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325579800	CHEV_18_33624171	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228017100					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33597570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	17 bp distal
Gm10549	predicted gene 10549	within coordinates
Nrep	neuronal regeneration related protein	488 bp upstream
Rr352671	regulatory region 352671	within coordinates
Tssr152760	transcription start site region 152760	1973 bp upstream
Tssr152761	transcription start site region 152761	1074 bp upstream
Tssr152762	transcription start site region 152762	1044 bp upstream
Tssr152763	transcription start site region 152763	887 bp upstream
Tssr152764	transcription start site region 152764	859 bp upstream
Tssr152765	transcription start site region 152765	715 bp upstream
Tssr152766	transcription start site region 152766	661 bp upstream
Tssr152767	transcription start site region 152767	613 bp upstream
Tssr152768	transcription start site region 152768	453 bp upstream
Tssr152769	transcription start site region 152769	131 bp upstream