rs228019241 SNP Detail

Summary

• ID
  rs228019241
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3122066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCAGCCTGG TCTACTCAGT GAATTCCAGG AAGAGTCAGG
  GTTATACAGA GAAACCCTGT CTCAAAAAAT AAAACCCAAA CCCAAGCCAA CCAACCAACC
  C
  ATGCCTTAAA ATAGTAAAAG AGGGGCTGGA GAGATGGCTC AGCATTTAAG AGCACTTACT
  GCTCTTCCAG AGGCCCTGAG TTCAATTCCC AGCAACCAC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546746	CHEV_11_3072069	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228019241					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3122066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	240 bp proximal
Cpgi2458	CpG island 2458	1198 bp proximal
Rr441480	regulatory region 441480	1854 bp distal
Rr441481	regulatory region 441481	within coordinates
Rr441482	regulatory region 441482	784 bp distal
Rr441483	regulatory region 441483	129 bp proximal
Rr441484	regulatory region 441484	605 bp proximal
Rr441485	regulatory region 441485	1125 bp proximal
Rr441486	regulatory region 441486	1907 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	729 bp downstream
Tssr106449	transcription start site region 106449	1253 bp downstream