rs228023276 SNP Detail

Summary

• ID
  rs228023276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54627394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    actcatatc aggctggcct Gatatatata
  tatatatata tatatacaca cacacacata catatacaca cacatacaca cacatataca
  tatacacaca catacatata tatatatata tatatatata tatatatata tatatatata
  Y
  acacacatat atacacacac atacacacac acatatatat aCCCACACCC AAAAGGGTAT
  GTTCTTTTAA CATTTTGGTG ATTGGTATTT TGTATGCAAA GTTTAGCATT TTTTGTATGT
  AGTGGAGGAA TGTAAGCCGC TGACAGTTAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320772420	CHEV_3_54523895	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228023276					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54627394 () rs orientation: forward

Symbol	Name	Function Class
Rr72352	regulatory region 72352	1594 bp distal
Rr83073	regulatory region 83073	698 bp distal
Supt20	SPT20 SAGA complex component	within coordinates