rs228024336 SNP Detail

Summary

• ID
  rs228024336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:4879347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTT TTACAATGAA ACTGGGGAGA
  Y
  GGTTTAATGG TTCAGGGCAT AGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319612500	CHEV_1_4799205	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228024336					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4879347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9	CpG island 9	830 bp distal
Gm37988	predicted gene, 37988	Intron
Gm70766	predicted gene, 70766	1394 bp upstream
Lypla1	lysophospholipase 1	Intron
Rr407434	regulatory region 407434	1405 bp distal
Rr407435	regulatory region 407435	1203 bp distal
Rr407436	regulatory region 407436	1008 bp distal
Rr407437	regulatory region 407437	1205 bp proximal
Tssr5801	transcription start site region 5801	1452 bp downstream
Tssr5802	transcription start site region 5802	1196 bp downstream
Tssr5803	transcription start site region 5803	837 bp downstream
Tssr10888	transcription start site region 10888	1422 bp upstream
Tssr10889	transcription start site region 10889	1377 bp upstream