rs228034290 SNP Detail

Summary

• ID
  rs228034290
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:26089591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTAAAAG CCAGATGAAC
  TATCCCATAC CCAGTATTTG AAACATAAAG AAGATTTTTT AATCTGGTCA CAAGTTAACA
  ATCCAGTTCT TTTAAGAAGG GTTGGGGGGA TAAGAACCCT GATGAGACCC ATTTGTTCAA
  AGCAATGAAT ACTTTCTCCA GGTTTGTATA CTTTATCAGG TTTGACAATT TGGTGTTTAG
  S
  ATAAATTGAA TATATTTTTA CCACCATAAC CTGGAGAAAC CTCTTCTGCT TCTGTCTTGA
  TAAGCTGTTT GCTCGTTTGC TATTGAAAAG AGTAAGCATG GTTTGAACCT CAGAATAGGT
  TAGATGATGG AAACATAAAG TATTATGTGT GGGTAAATTG GGGAAGGAGG ATTTCTGGGT
  CTAACAAGAC TTAACAGATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374007191	MGP_WTSI_8_26710047	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228034290					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374007191	MGP_WTSI_8_26710047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:26089591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20188	CpG island 20188	1761 bp distal
Cpgi20189	CpG island 20189	1691 bp proximal
D830025C05Rik	RIKEN cDNA D830025C05 gene	368 bp downstream
Letm2	leucine zipper-EF-hand containing transmembrane protein 2	1993 bp upstream
Rr368506	regulatory region 368506	1840 bp downstream
Rr661159	regulatory region 661159	1503 bp distal
Rr661160	regulatory region 661160	353 bp distal
Rr661161	regulatory region 661161	1536 bp proximal
Tssr76687	transcription start site region 76687	1870 bp downstream
Tssr76688	transcription start site region 76688	1891 bp upstream
Tssr76689	transcription start site region 76689	1912 bp upstream
Tssr76690	transcription start site region 76690	1930 bp upstream
Tssr76691	transcription start site region 76691	1987 bp upstream
Tssr80719	transcription start site region 80719	1977 bp upstream
Tssr80720	transcription start site region 80720	1961 bp upstream