rs228037205 SNP Detail

Summary

• ID
  rs228037205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54814265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGAGCAGT GGTCAGCGGG AGGCCGAATA
  GGCACGGCCC CGCGGGCAGC GGGCTCCCGT GGCGCTGGTC GTAGCCCATG CTGATGCCGC
  TGGTCCGATT GCTGCACGGC CGGCTACCTC CGGCTCCGCT GGCCCCGGCT CCGTCCAGCA
  R
  CAGGCTGCCC CGGGGGCTAG ATGGCTTGCT CGCATCGCTG GCCGAGCTAC TGGCGAAGCT
  GGAGCGAGGG CTAAGGGCTG GAGCCGTGGT CTCCAGCCGA AAATCAGGAG GCGACGACAG
  AGGCAGAGGC AGGGCTCGAG TGGGCGGCGG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324638262	CHEV_14_55195645	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228037205					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54814265 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	within coordinates
Cpgi6463	CpG island 6463	within coordinates
Gm63340	predicted gene, 63340	787 bp upstream
Rr389677	regulatory region 389677	within coordinates
Rr404101	regulatory region 404101	1347 bp upstream
Rr492273	regulatory region 492273	740 bp proximal
Rr492274	regulatory region 492274	853 bp proximal
Rr492275	regulatory region 492275	1549 bp proximal
Tssr128601	transcription start site region 128601	1100 bp upstream
Tssr128602	transcription start site region 128602	672 bp downstream
Tssr128603	transcription start site region 128603	719 bp downstream
Tssr128604	transcription start site region 128604	735 bp downstream
Tssr128605	transcription start site region 128605	753 bp downstream
Tssr128606	transcription start site region 128606	770 bp downstream