rs228037941 SNP Detail

Summary

• ID
  rs228037941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127689308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTCTTT GTATCTGGGG
  GATTTTTGAG TAGCTAATTA CTGTACTGCC TGTAAAAAAA AAAAAAAAAA AATCGTCCCA
  CGTAGAACTC CATCTTTACA TTCAACTGCT AGTCTAGTCT TACAGATATC TGATGTTATA
  ATTTCCCTTA GTCTTCTCAA TGATATCCAA TTCTGAGAAC TTTAAAAGTA CCCAGTTTCC
  Y
  TATTATGTCT GTTACTAAAG CTTCCTTCCC TTTGGTGCTC ACAGCAGGCA ATTTTCTTTT
  TTTTTTTTTC CTTTCCACTT CTAAAATGAA GTTCAGCTCT GCTCGGTGGT GCTGTGAAAC
  TTGCTCTGGG AGAGTCCCGG TGTCACCTAG GCACCGACCC GTGCTTCCCG ATCCTCTGTG
  CGGGCCGTCC GCCCACCCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957987	CHEV_3_127598577	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228037941					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127689308 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	55 bp proximal
Fam241a	family with sequence similarity 241, member A	Intron
Rr398009	regulatory region 398009	614 bp upstream
Rr584895	regulatory region 584895	1352 bp distal
Rr584896	regulatory region 584896	339 bp proximal
Rr584897	regulatory region 584897	619 bp proximal
Tssr35606	transcription start site region 35606	1051 bp upstream
Tssr35607	transcription start site region 35607	146 bp upstream
Tssr35608	transcription start site region 35608	561 bp downstream
Tssr35609	transcription start site region 35609	588 bp downstream
Tssr35610	transcription start site region 35610	612 bp downstream