rs228043007 SNP Detail

Summary

• ID
  rs228043007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58420703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCGACTCC AAGAGGCCCT
  GGGTTTGATG CCAAGCACTG TCCCTACGAA TTACAAAATG AGAGGAAAAG GAATGGCCTG
  GTCTCCCTCA TCTTCTTGGC TGCTTGACTG TCATTTTGAC TTCTTAGAAC TTAAGGTTAC
  AGGGATCGAG GACCAACGGT CCTGAAACTT TTGCTTCCAA CACACTTATC GAAAATGACA
  Y
  AAACTTAAAG GCATACCCGG AGCTCCACCA CCCCCCCCCA CCCCCCCCCC CCCCGCAACA
  CACACACTGG TTAGGTGCAG CCTTCCTTTT CTAATCCGAA GCTCTCAACT TCTGTGGGTT
  GTGAACTCTT AGAAACAAAA ACAAAAAGCA AACTGCAGAC ATGTACTAAG GAATTCAGTC
  ATGAAGTGCA AAGGTGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388759128	MGP_WTSI_13_58374250	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228043007					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388759128	MGP_WTSI_13_58374250	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58420703 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5724	CpG island 5724	462 bp proximal
Gkap1	G kinase anchoring protein 1	within coordinates
Rr276751	regulatory region 276751	903 bp distal
Rr281488	regulatory region 281488	97 bp proximal
Rr388493	regulatory region 388493	1487 bp downstream
Tssr120072	transcription start site region 120072	1363 bp upstream
Tssr122822	transcription start site region 122822	964 bp upstream
Tssr122823	transcription start site region 122823	1207 bp downstream
Tssr122824	transcription start site region 122824	1232 bp downstream
Tssr122825	transcription start site region 122825	1374 bp downstream
Tssr122826	transcription start site region 122826	1451 bp downstream
Tssr122827	transcription start site region 122827	1478 bp downstream
Tssr122828	transcription start site region 122828	1572 bp downstream
Tssr122829	transcription start site region 122829	1615 bp downstream
Tssr122830	transcription start site region 122830	1944 bp downstream