rs228043756 SNP Detail

Summary

• ID
  rs228043756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80818696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATAATTT CTCAACAATA
  GTAACTGGAA AATGGCCTAT AACAGCAAAA TAATGACATG TGTTATATTA TTACCTAAAA
  ACACATAATC TTTAGAAGTC ATTACTTAGT GTTTATCTGT TGTAATGGTT GGATATTTCC
  AGCTTTTATT GACCATTAAT ATTAACCCTT CTCAGAAAAG AACCCAGGCT GATAAACTTT
  R
  ACTTTTGGGA GACTGTAGCT GGATGGTTTT TTCCTTTTTT TTTTTTTTTT AAAGAAAAGT
  ACTTCTATAT TTTATCACAC ACTTTTTGAG GGATACACTA AATTCCTTTT GTAAGTCCTT
  TACAAAAAAT ACTTCAGAAT AAATGTCATG TACCATGCAA ATTTACTTCC ACTGTGTATA
  GCAATGTAAA TATAATAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320812958	CHEV_3_80715311	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228043756					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80818696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1681 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	1149 bp upstream
Gm65109	predicted gene, 65109	1832 bp upstream
Rr578673	regulatory region 578673	1418 bp proximal
Rr578674	regulatory region 578674	1843 bp proximal