rs228048389 SNP Detail

Summary

• ID
  rs228048389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:4526711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGAGGAG GGGCCTGGTT
  GGCCTGGGGT GGACACATTG TCTCTAGAGG TGGGGCCAGG TCAGCCAGGG GTGGGCTCAT
  CGCCTCTAGA GAGGGGGCCT GGTTAGCCTG GGGCGGACTT ATCGATTCTG GGAGAGGGGC
  GCGGGTAGAT TCCACTTTGG AGGGCGCGGG TCCAGATTCC ACAGCTGAGT CTCCGCCACC
  Y
  GGAGTGGAGT CCCCTAACTT GTAGAACCTC GCAAAAGTCT CCGAGGGTTT GGTTGCAGTG
  TGAGGGGCGA ACCCAGCCAC CCGCGCTATC TCTACAACGC GGTCAGAGAA CGCCTTCAAC
  TCCTTGGGCC GCAGGTCCAC CAAGTACCTA TGTTGGGAAA CTGTGTGTGA GGAGACCTGG
  CTTTTGGCCC AGCTGTGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370565911	MGP_WTSI_7_4475314	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228048389					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370565911	MGP_WTSI_7_4475314	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:4526711 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18237	CpG island 18237	1792 bp distal
Dnaaf3	dynein, axonemal assembly factor 3	Coding-Synonymous
Rr641976	regulatory region 641976	694 bp distal
Rr641977	regulatory region 641977	688 bp proximal
Tnni3	troponin I, cardiac 3	Intron
Tssr64337	transcription start site region 64337	1867 bp downstream
Tssr70484	transcription start site region 70484	1809 bp upstream
Tssr70485	transcription start site region 70485	1263 bp upstream
Tssr70486	transcription start site region 70486	900 bp upstream
Tssr70487	transcription start site region 70487	883 bp upstream
Tssr70488	transcription start site region 70488	625 bp downstream