rs228051626 SNP Detail

Summary

• ID
  rs228051626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:138102957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAAAGACT TCTGTGTCCA
  GAAGGGCAAA TCCAAAGGCC AGAAGTTTGA GCCACAAACC CATGGTCATA TCTGGAGATC
  AGCTGTGCCC CTAAGAAATA GGGTCTCCCT GAAAGGCAAA ATAATGGTTA TCTCTCTTGA
  AGTTTGTCTC TGTAAAGCTA AGTCAAAACT AAAAGAAAAG AACGCATACT TTGCACTCTG
  W
  CTTATCAGAT GGGGAGCAAG TTTCCTACTC TCTTACCCTA AGAACAAACC ACTTGCTAGC
  TACATGCACT GCTAAATGGT GATGTCAGAT TCGGTTTTAC TAACTTCTCC AAAAATACTG
  TAAAGGGTCC TCTTTGCAGG AAGTTAAAAA AAAAAAAAAA AAGGTCGTTC AAAGTCAGTG
  CAATGGCTTC TTACTTCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351608854	MGP_WTSI_1_140071796	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228051626					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351608854	MGP_WTSI_1_140071796	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138102957 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprc	protein tyrosine phosphatase receptor type C			Intron
				mRNA-UTR
Rr396335	regulatory region 396335			8 bp upstream
Rr396336	regulatory region 396336			969 bp upstream
Rr419677	regulatory region 419677			within coordinates
Rr419678	regulatory region 419678			38 bp proximal
Tssr233	transcription start site region 233			399 bp downstream
Tssr9153	transcription start site region 9153			761 bp downstream
Tssr9154	transcription start site region 9154			409 bp upstream
Tssr9155	transcription start site region 9155			472 bp upstream
Tssr14018	transcription start site region 14018			915 bp upstream
Tssr14019	transcription start site region 14019			880 bp upstream
Tssr14020	transcription start site region 14020			871 bp upstream
Tssr14021	transcription start site region 14021			21 bp upstream
Tssr14022	transcription start site region 14022			19 bp downstream
Tssr14023	transcription start site region 14023			64 bp downstream
Tssr14024	transcription start site region 14024			407 bp downstream
Tssr14025	transcription start site region 14025			434 bp downstream
Tssr14026	transcription start site region 14026			452 bp downstream
Tssr14027	transcription start site region 14027			473 bp downstream
Tssr14028	transcription start site region 14028			499 bp downstream
Tssr14029	transcription start site region 14029			523 bp downstream
Tssr14030	transcription start site region 14030			677 bp downstream
Tssr14031	transcription start site region 14031			694 bp downstream