rs228056689 SNP Detail

Summary

• ID
  rs228056689
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAAACTAG GACCCTTGAC AAAGTCAATA AAACAGGTAA
  AGCTCGAGGC AACTGACACA AACGGTCATC TCAGAAGAAA AGAGGAGCCG GGCGTGGTGG
  C
  GCACTCCTTT AAGCCCAGCA CTCGGGAGGC AGAGGCAGGC AGATTTCTAA GTTCGAGGCC
  AGCCAGGTCT ACAGAGTGAG TTCCAGGACA GACAGGGCT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546763	CHEV_11_3073817	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228056689					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123814 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	1233 bp distal
Cpgi2458	CpG island 2458	8 bp distal
Rr441481	regulatory region 441481	1364 bp distal
Rr441483	regulatory region 441483	1598 bp distal
Rr441484	regulatory region 441484	864 bp distal
Rr441485	regulatory region 441485	within coordinates
Rr441486	regulatory region 441486	159 bp proximal
Rr441487	regulatory region 441487	1364 bp proximal
Rr441488	regulatory region 441488	1795 bp proximal
Rr441489	regulatory region 441489	1865 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	1017 bp upstream
Tssr106449	transcription start site region 106449	485 bp upstream