rs228057310 SNP Detail

Summary

• ID
  rs228057310
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCAAAAG CTCAATGGAG
  ATTGGCTAAA ACCTCTTCTC CCAGCACAAG GGTGACCTTG TGGTCCTGGG AGCAGCTGCT
  GTCAATGCCA GCTCATGCTT TTAAGGGTGA CCACCCAGTG TTGGAGCAGC TGCAGCTCTG
  ATCCCAGAGA TCTTGCCCTA GCTAGGTATC CCTGAGACTG GAAGGGTCAG ACAGGCTTAA
  K
  AGAACCAGTG ATTTCTGGCT TGTTAACTAA TCTAATCAAT AGGGGCCTTA AGCTCTCTGG
  CTCCATTTAT ATTCTACCAG TTCTTGGCCT GGGTTCCTCA AAGGCAAATC CGGATCCTCC
  AAATACACAG ATAAGACTTG GAGGCACTCC ACAGGTACCC GCTTGTGCGC TTGTGTTTGC
  AGATACGGGG TGGCAAACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377237271	MGP_WTSI_9_37062449	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228057310					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377237271	MGP_WTSI_9_37062449	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	308 bp proximal
Gm10177	predicted gene 10177	1683 bp downstream
Gm48081	predicted gene, 48081	634 bp upstream
Gm65989	predicted gene, 65989	1499 bp downstream
Rr676656	regulatory region 676656	within coordinates
Rr676657	regulatory region 676657	540 bp proximal
Rr676658	regulatory region 676658	645 bp proximal
Rr676659	regulatory region 676659	864 bp proximal
Rr676660	regulatory region 676660	1172 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	Intron
Tssr88821	transcription start site region 88821	493 bp downstream
Tssr88822	transcription start site region 88822	517 bp downstream
Tssr88823	transcription start site region 88823	539 bp downstream
Tssr88824	transcription start site region 88824	565 bp downstream
Tssr88825	transcription start site region 88825	580 bp downstream
Tssr88826	transcription start site region 88826	666 bp downstream
Tssr88827	transcription start site region 88827	759 bp downstream
Tssr88828	transcription start site region 88828	782 bp downstream
Tssr88829	transcription start site region 88829	805 bp downstream
Tssr88830	transcription start site region 88830	821 bp downstream
Tssr88831	transcription start site region 88831	866 bp downstream