rs228057494 SNP Detail

Summary

• ID
  rs228057494
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57568176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCCCCA CACCCCAGGG
  GCGGAGCGAG GCGCGGAGAC GTCAGGGCGG GGACCTAGTG CTGCGGAGCG CGCTCTCCCG
  GAGGCTCCCG GCGGCCCACG TTCCCGGCTG GCGCGGCCGG TGGTGGCGGT GGCGGTTGAG
  ACTGGGATCT TGCAGTTCGC GGCGGCGCTG GGGCGCAGCC AGGCGGCCGC GCCGGTGGAG
  W
  CGGAGGCTGA GCTCTGAGCC AGCCGTGCGC GCAGCTTTGC CCGCCCCCCC CCCCAGGAGC
  AGACCCCACG CGCCCTTAGG CTGTCCCCGG GGTCGAGTTG AGCTCCCCAC GGGTGCCCTT
  TTATCTCCTT GGGTGACTAC AGCGTGTGTT TTGTTTTTCT TCCTTTTTCC CCTGCCCGTG
  TGCCCTTCTC CAGGATGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361647858	MGP_WTSI_4_57581048	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228057494					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361647858	MGP_WTSI_4_57581048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57568176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14331	CpG island 14331	within coordinates
Pakap	paralemmin A kinase anchor protein	within coordinates
Tssr37355	transcription start site region 37355	458 bp downstream
Tssr37356	transcription start site region 37356	340 bp downstream
Tssr37357	transcription start site region 37357	307 bp downstream
Tssr37358	transcription start site region 37358	83 bp downstream
Tssr37359	transcription start site region 37359	40 bp downstream
Tssr37360	transcription start site region 37360	16 bp downstream