rs228060342 SNP Detail

Summary

• ID
  rs228060342
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65139570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTATGTTT GTCTTTCCTC
  CCGTCTGCAG ACCCAGAGGT CACCAAGGTA TGCACCGTCC CATAAGTACT GCTTCCTGAC
  TGGAAGGAAG TGAGTCAATA TTTGAAACCT CTTTCAGGGT TAAGTTCCCC AGGATACCAC
  TTAATAGGGT TTAGATATTG AAGATAAGCA AGAGCCACTT AGTGCCAGGA ACACAGGTTG
  W
  TTATTTATTG CATATATGGG CTGTAACAAG CAAAAGGAGG CTTAGTACAA ATCCATGACC
  CGTCTCAGAG AGCCGACCTT GGCATCCATG GCGCCCCAGT CGTGGTAGCG CCTGTAGTCT
  CCAGGCCTGA GCAGGTATTG GCGGCCTCGG TAGTTGGGCA TCTCATAGAG GACCCAGCAG
  CCCTCCAGCA CGTGCATGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349899220	MGP_WTSI_1_65146985	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228060342					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349899220	MGP_WTSI_1_65146985	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65139570 () rs orientation: forward

Symbol	Name	Function Class
Cryga	crystallin, gamma A	within coordinates
Gm28845	predicted gene 28845	208 bp downstream
Tssr102	transcription start site region 102	237 bp upstream
Tssr7112	transcription start site region 7112	13 bp downstream
Tssr7113	transcription start site region 7113	97 bp upstream
Tssr7114	transcription start site region 7114	107 bp upstream
Tssr7115	transcription start site region 7115	123 bp upstream
Tssr7116	transcription start site region 7116	184 bp upstream
Tssr7117	transcription start site region 7117	212 bp upstream
Tssr7118	transcription start site region 7118	242 bp upstream
Tssr11968	transcription start site region 11968	12 bp downstream
Tssr11969	transcription start site region 11969	42 bp downstream
Tssr11970	transcription start site region 11970	216 bp downstream
Tssr11971	transcription start site region 11971	239 bp downstream
Tssr11972	transcription start site region 11972	261 bp downstream