rs228063199 SNP Detail

Summary

• ID
  rs228063199
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130133580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGACAGGG TTTCTCTGTG
  TAGCCCTGGC TGTCCTGGAA CTCACTCTGT AGACCAGGCT GGCCTCGAAC TCCGAAATCC
  GCCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCGTGC GCCACCACGC CCGGCTCTTA
  CTAAATTCTC ATGTATTACT CGTGAGGGCA GGTCATGCGG AGTGAGCACA GTCACACGGC
  W
  CCCAGGTGGC GGCCAGAGCT GTAGAGCTGA TTCTCCTCTT CCACTTTAAT GTGGGCACGA
  GACAGTCACT CACCGAGCCA TCTCTCCAGC CACCAAGTGA TTCTTACTTA AAGAAGACAG
  CCTGATGAAA ATCATAGACT CTTATGGTGA AGGGTGACCC CCAGACAAAG TAGAAAGCAA
  CCTCCTGGGA GACAGGAGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373160661	MGP_WTSI_7_137675364	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228063199					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373160661	MGP_WTSI_7_137675364	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130133580 () rs orientation: forward

Symbol	Name	Function Class
Gm57247	predicted gene, 57247	407 bp downstream
Nsmce4a	NSE4 homolog A, SMC5-SMC6 complex component	676 bp downstream
Rr153982	regulatory region 153982	1580 bp distal
Rr153983	regulatory region 153983	980 bp distal
Rr153984	regulatory region 153984	380 bp distal
Rr153985	regulatory region 153985	1421 bp proximal
Rr169359	regulatory region 169359	21 bp proximal
Rr169360	regulatory region 169360	1355 bp proximal
Rr381489	regulatory region 381489	within coordinates
Tssr69470	transcription start site region 69470	537 bp downstream