rs228064992 SNP Detail

Summary

• ID
  rs228064992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72426404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAGCTAAT AAGGGTTGCA
  TTTTAAGGAA TTTTGAGACT GAGATGAAAT GTAAGGATTT TGAAAAATAA GCCAAAAAGC
  TATCACAGAG TATCTTCAAA ATACCTTTTT TTTTTTTTAA ATGAGTTTCT TTCCAGGACC
  AGATAGTGGA AAGGGTCTTG GTGGCAGGCC ATCCCCTGTG ATGTCAGAGC CTTGCCAGGC
  Y
  CCAGAGGGGC TGTAAGCATT TGAGTTGAAC TCTGCTGAAG GGCACTGATA GGACACACAA
  GCAGCTTTCA AACCTGTTTT CAGAGCTACA TGGACCCACT GAAATATCAG CATTGAACAT
  CAGGGTATTG TCATGTGTGT GGGCTTTTGT CATTCTGAAG CTTATTTTTG CCAACTTTTC
  AGACTGGAAT GATAAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320343244	CHEV_2_72434117	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228064992					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72426404 () rs orientation: forward

Symbol	Name	Function Class
Rr558998	regulatory region 558998	1609 bp proximal
Tssr18356	transcription start site region 18356	1485 bp upstream