rs228069678 SNP Detail

Summary

• ID
  rs228069678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32305390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGGAGT ATAAAACAGT
  TAGCCAGGGG CAGTTCCATC AGGACAGTAG CTCAGTTGGC CAGGGAGGAC GAGCAAGGGA
  AAGAGAAGAC TCTTAACAGG CACGGTAACG CAGGCTTGTA AGCCCAGCAC TGGAGAGGGA
  GGCTGAGGCA GGAGGATCTT AATGCAAGGC CAGCTTTAAC TGTACAATGA CATGGTAAGA
  Y
  TGTCAGAAAA AAGAAAAAAA GAAAGAAAGG AAAAAGAAAA AGTAAACTGG ACTGTGGTAA
  CAAACAGCTT TGGCTCCGGC ACTCGGGAGG CAGAGGCAGA TGGATCTCTG AATCTGAGGC
  CAGCCTGATC TACAGAGTAA GTTTCAGGAT AGTCCAGGTT ACATCAAAAA AGAAAGGAAG
  AAAGGAGGAA GGAAGGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395859335	MGP_WTSI_16_32486658	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228069678					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395859335	MGP_WTSI_16_32486658	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32305390 () rs orientation: forward

Symbol	Name	Function Class
Gm59898	predicted gene, 59898	1487 bp upstream
Rr514710	regulatory region 514710	1019 bp distal
Rr514711	regulatory region 514711	560 bp proximal
Rr514712	regulatory region 514712	1297 bp proximal
Rr514713	regulatory region 514713	1498 bp proximal
Slc51a	solute carrier family 51, alpha subunit	within coordinates
Tssr4846	transcription start site region 4846	1024 bp downstream
Tssr4847	transcription start site region 4847	1043 bp downstream
Tssr137989	transcription start site region 137989	1521 bp upstream
Tssr140806	transcription start site region 140806	397 bp upstream
Tssr140807	transcription start site region 140807	580 bp downstream
Tssr140808	transcription start site region 140808	596 bp downstream
Tssr140809	transcription start site region 140809	623 bp downstream
Tssr140810	transcription start site region 140810	653 bp downstream
Tssr140811	transcription start site region 140811	1071 bp downstream
Tssr140812	transcription start site region 140812	1095 bp downstream
Tssr140813	transcription start site region 140813	1237 bp downstream
Tssr140814	transcription start site region 140814	1301 bp downstream
Tssr140815	transcription start site region 140815	1325 bp downstream