rs228076342 SNP Detail

Summary

• ID
  rs228076342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45455045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGGGCG GGGCTGGGGG
  CGTTGTTTGA TGCCTTGTGA AGTCAGACTA ATTTTAGTGG CGGTGAGACA AGGCAGTCAG
  GTTTGTAACC CAGGCTGGCT GCAAACTTTA GAGCCTCCTG CCTCAGCCTT CCAAGAATTT
  GGATTCTAGG CATTCGCCTA CCTTGCTCTG CTCAGTTTGC TTTATTCCAC CTCCCCCCCC
  S
  CCCCCCCACC AACTTCGTTT TAGTTAGCTA AGGAGAGTGA TGAAAAGAAA TGTGGAGTTT
  GTGAGTTTGG GGATACTTTT TTTTTTTTTT TTGAAAAGTT TTATTCTTTA TGATTCTGAG
  TAGAGAAAAT TTGTGGCAAC TGTTTCTGAG TATATATATA TATATATATA TATATATATA
  TTAATTTGTT ACTTTCCTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
ss380241452	MGP_WTSI_10_45298755	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SWR/J	WSB/EiJ
rs228076342					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380241452	MGP_WTSI_10_45298755	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45455045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	89 bp distal
Gm3805	predicted gene 3805	838 bp upstream
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	within coordinates
Rr224766	regulatory region 224766	within coordinates
Rr224767	regulatory region 224767	555 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	within coordinates
Tssr93194	transcription start site region 93194	1035 bp downstream
Tssr93195	transcription start site region 93195	1021 bp downstream
Tssr97528	transcription start site region 97528	838 bp upstream
Tssr97529	transcription start site region 97529	822 bp upstream