rs228078178 SNP Detail

Summary

• ID
  rs228078178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38939113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGAGTGC GGTTGGTGGT
  GTGTGACACT TTAAAAAAAT CAAATTTAAA CTGCATTTTA TTTATTTCTA TTTTCTTATA
  GTTTTTCTCC CCCCCCCAGG CCAAAATCGA AACCAAACGT TATTAGATTT CCTTTGGCTA
  GAGAATGTCA AGGGGAGAAA AGCCCCACAG GGGATCAAAA ATTCCAAACT GGGTTTGTAA
  R
  AGGAAACTGT CCCTGTAGAA GCTGCCATTG TTTCAGCTGA AGCCTACAGA CTGCTCTGTG
  GACAGAATTC CTGCTATGAG ACTAACCGCG CGCCATGGGT GCCAGCGCGC CCCTCTCTTC
  CTTTGAGAAG TTGGAGCTTA GCTGGCATCG AGGCCTTGGA CCCGAGGGAC AGCGAAGAGG
  GGCGCAAGCT CACGAATCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357622689	MGP_WTSI_3_38783886	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228078178					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357622689	MGP_WTSI_3_38783886	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38939113 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	18 bp proximal
Fat4	FAT atypical cadherin 4	1976 bp upstream
Gm56780	predicted gene, 56780	725 bp upstream
Gm65329	predicted gene, 65329	within coordinates
Rr575715	regulatory region 575715	1647 bp distal
Rr575716	regulatory region 575716	1939 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	470 bp distal
Rr575719	regulatory region 575719	572 bp proximal
Rr575720	regulatory region 575720	1138 bp proximal
Rr575721	regulatory region 575721	1486 bp proximal
Tssr28930	transcription start site region 28930	348 bp upstream
Tssr28931	transcription start site region 28931	719 bp upstream
Tssr28932	transcription start site region 28932	746 bp upstream
Tssr28933	transcription start site region 28933	778 bp upstream
Tssr28934	transcription start site region 28934	879 bp upstream
Tssr28935	transcription start site region 28935	912 bp upstream
Tssr28936	transcription start site region 28936	924 bp upstream