rs228080388 SNP Detail

Summary

• ID
  rs228080388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48723417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGACTCTGG ATTCATGGCT
  CTGCATGTAG CTGTTCTGTG AGAGCACTGC TCAGCAGGCA CAGGCCCACC GCATACCTGT
  AAGGGTAAAG AGGAACCCGC CAGGGCGCTG ACAGCCGCTT GGGAGCCAGG GAGCCGCTGT
  GCACTCGGGT GAGCTTGGTG TGTTGGGTTT CCTGGACAGT GAAAGAGCAG TGAATTGAGG
  R
  TCGGCGACAG CATAGAGTGG GACAGAGCCC TGAAATTTCC ATGCCATCAT CCCTAGGCCC
  TAGGCTTTCC ATCTCACCAT CTGCGCCTTT CTGAAACCCT CAGTTAACAA AGGTGATGGT
  TTTTTGATGG AGGAGTAATT AAAGTCCGAG CCACAGGCTT TCCCAAGCTC CCCCAGCAGG
  TGGAGCACAT TTCTTCATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368228458	MGP_WTSI_6_48696482	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228080388					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368228458	MGP_WTSI_6_48696482	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48723417 () rs orientation: forward

Symbol	Name	Function Class
Gimap5	GTPase, IMAP family member 5	within coordinates
Gm28053	predicted gene, 28053	within coordinates
Rr135565	regulatory region 135565	184 bp proximal
Rr146257	regulatory region 146257	within coordinates
Rr368069	regulatory region 368069	324 bp downstream
Rr399641	regulatory region 399641	12 bp upstream
Rr399642	regulatory region 399642	1166 bp upstream
Tssr1832	transcription start site region 1832	1180 bp downstream
Tssr56207	transcription start site region 56207	303 bp downstream
Tssr56208	transcription start site region 56208	271 bp downstream
Tssr56209	transcription start site region 56209	249 bp downstream
Tssr56210	transcription start site region 56210	181 bp downstream
Tssr56211	transcription start site region 56211	224 bp upstream
Tssr56212	transcription start site region 56212	1441 bp upstream
Tssr60779	transcription start site region 60779	379 bp upstream
Tssr60780	transcription start site region 60780	1018 bp downstream
Tssr60781	transcription start site region 60781	1052 bp downstream
Tssr60782	transcription start site region 60782	1258 bp downstream