rs228084201 SNP Detail

Summary

• ID
  rs228084201
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105429475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACACAC AAGTGAACAA
  GACAGACAGA CAACGAGATC CCATTTTACC TTTGATGCAC AGCGTCTGTG TCCTCCTGAG
  GAGGGCCTTC CTGGCCAACA CACCAAATGT TAGAGTTCGT CAAAAGACCC TCATTCACAA
  GAACCTCAGA GACCACCACC ATCGCTGCCA ACCCCATGAG GATTTTTATG GATCCAACAT
  K
  TTGGGGACCC TCCTCTCAGC GCTCAGGCCA GAGGAGAGAC CAAGAACAAA GAAAGAACAC
  ACTTTCGATA CCTTTGTAAG GGGCAGATTT GAGCAACAGG GTTCTCATTG GTGTAGCAAG
  TAACCCTTTC AGGCATTGGT TAGTTTGGAT AGCGACTAAG TAACTCTTTG GCCTAGTGAC
  TCACTTTGCT TGCCCCCATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389811503	MGP_WTSI_13_106083047	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228084201					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389811503	MGP_WTSI_13_106083047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105429475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6065	CpG island 6065	758 bp proximal
Rnf180	ring finger protein 180	within coordinates
Tssr120943	transcription start site region 120943	1341 bp downstream
Tssr123952	transcription start site region 123952	1029 bp upstream
Tssr123953	transcription start site region 123953	993 bp upstream
Tssr123954	transcription start site region 123954	37 bp downstream
Tssr123955	transcription start site region 123955	1323 bp downstream
Tssr123956	transcription start site region 123956	1336 bp downstream
Tssr123957	transcription start site region 123957	1382 bp downstream
Tssr123958	transcription start site region 123958	1414 bp downstream
Tssr123959	transcription start site region 123959	1459 bp downstream
Tssr123960	transcription start site region 123960	1690 bp downstream
Tssr123961	transcription start site region 123961	1852 bp downstream