rs228092054 SNP Detail

Summary

• ID
  rs228092054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118857980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGGGTG TGAGCACACA
  ATCAAATAAT AAATATATTT TTAAAAATAC TTTTTTCAAC TACAGTTAGG GTCACTAAAA
  GTACACCGCC ATCAAACGTG CCTTGGCATT CCCAGAGTTC TGGATCCCTG CTGGGTCTGG
  CCAGCATGTA CTCTCATCTC CCCTTCTCCC TCTGGAAATT TCTCTCTTCT CTGGGGAGGG
  K
  GGGGGGGGGC TTCTTTTCCC TTTCTATTAA TTTATTTATT TATTCACTTT ACATCCCAGC
  CACAGGCCCT TCTTCCACTT CCCCCTCACA CAGCCCTTCC CCATCCCCTC TTCCTCTTCA
  CCTCTGAGGA GGAGCTCCCT GCCCCCCCAC CCCCAATCCC ACCCCCACCC CCACCCTGTA
  CCAACCCACC CTCGAACCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss363006515	MGP_WTSI_4_118673388	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs228092054					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363006515	MGP_WTSI_4_118673388	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118857980 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	1325 bp downstream
Gm12862	predicted gene 12862	298 bp upstream
Rr398425	regulatory region 398425	930 bp downstream
Rr598452	regulatory region 598452	1340 bp distal
Rr598453	regulatory region 598453	309 bp distal
Rr598454	regulatory region 598454	208 bp distal
Rr598455	regulatory region 598455	911 bp proximal