rs228092108 SNP Detail

Summary

• ID
  rs228092108
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:37276602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTATTT TCCTGGATGG
  TGCTTTGAAA TCTTGACTTG GGGAGCTTAT AGTAGGAGTT CTAGGGACTC AGCTGCTTTT
  CTCAAGCTAA TCTTATGAGA CGCGTTAAGC CTGCTTGGGA GCGTGGAGAC TGGATGAACA
  GGACGGTGGG GGCTGGGAGG AAGGGAGTGG CCGCGGTCCC GCGGTCTGCT GGGATTCAGC
  S
  GGTCGGGGAT GAAGAAGGTG AGGCTGGAGT AGATGGAGTG ACAGGGCGTG CACGATCGCA
  GTCCGCCGCC ACTTGGGTGC GGAATCCGAG CTGGACTTGC GGAGCGCCCC CTCCCCCTCC
  GTTTCTCCCT CCCTCTCCTT AGAGCATCAG CGGCGGCGGC GGCAGCTGGC AGTCGCAGAA
  AATCGAGACC CGCGGACCGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325585081	CHEV_18_37303203	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228092108					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37276602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9898	CpG island 9898	within coordinates
Gm37388	predicted gene, 37388	Intron
Gm38666	predicted gene, 38666	Intron
Gm38667	predicted gene, 38667	Intron
Pcdha1	protocadherin alpha 1	Intron
Pcdha2	protocadherin alpha 2	Intron
Pcdha3	protocadherin alpha 3	Intron
Pcdha4	protocadherin alpha 4	Intron
Pcdha4b	protocadherin alpha 4B	Intron
Pcdha5	protocadherin alpha 5	Intron
Pcdha6	protocadherin alpha 6	Intron
Pcdha7	protocadherin alpha 7	Intron
Pcdha8	protocadherin alpha 8	Intron
Pcdha9	protocadherin alpha 9	Intron
Pcdha10	protocadherin alpha 10	Intron
Pcdha11	protocadherin alpha 11	Intron
Pcdha12	protocadherin alpha 12	Intron
Pcdhac1	protocadherin alpha subfamily C, 1	Intron
Pcdhac2	protocadherin alpha subfamily C, 2	mRNA-UTR
Rr536246	regulatory region 536246	36 bp distal
Rr536247	regulatory region 536247	65 bp proximal
Rr536248	regulatory region 536248	193 bp proximal
Tssr150691	transcription start site region 150691	115 bp upstream
Tssr150692	transcription start site region 150692	165 bp upstream