rs228094901 SNP Detail

Summary

• ID
  rs228094901
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:63328077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACCCCTA AAACTCCCGA
  AGAGGAACCT GGGAGATTCT TCCGGCAGCC TGTGCGTATC TAGCTTTAAC CTTCATGCTT
  CAGATTCAGC CTATTTCTTC TGTTTTAGAG GGCAGAAACA ATGCCTCTTT TCACTGGAGC
  CGGCTCAGCT TCTCATCTCG TCTCTAAAAC AGCTCGCGTT TGTTTTCATC AACTTTCCTT
  Y
  CCAACTTTCT CAAACGCAGA AGTGCTTTTG ATTCTCTTCG TCCTGTCCTT TCAACTAAAG
  CCCGGGGAAG GAGCGTCAGA AGTCTCATCC AAGATTTCAC AGCAAGCAAA CGCTGACACT
  GCCTCTCGCT TCGCGCCTCC CTGCTGCGCG CCTTTGGCTA AGCGGAGCCA CCTCTCTGTG
  CCTCTTGTGT ACCAAGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361735987	MGP_WTSI_4_63070874	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228094901					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361735987	MGP_WTSI_4_63070874	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:63328077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14370	CpG island 14370	33 bp proximal
Gm57078	predicted gene, 57078	within coordinates
Rr398307	regulatory region 398307	276 bp upstream
Rr398308	regulatory region 398308	797 bp upstream
Rr593544	regulatory region 593544	613 bp distal
Rr593545	regulatory region 593545	820 bp proximal
Tssr37559	transcription start site region 37559	213 bp downstream
Tssr42046	transcription start site region 42046	153 bp downstream
Tssr42047	transcription start site region 42047	170 bp downstream
Tssr42048	transcription start site region 42048	348 bp downstream
Tssr42049	transcription start site region 42049	374 bp downstream
Tssr42050	transcription start site region 42050	843 bp downstream
Tssr42051	transcription start site region 42051	865 bp downstream
Tssr42052	transcription start site region 42052	905 bp downstream