rs228106335 SNP Detail

Summary

• ID
  rs228106335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:143012199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTTGAC ACCCACCATA
  TTCATTTGCC TTGGCGCTGA GCTACAAAAG TGTAAAAGAA CAAGAAGACT ACAAGTATGA
  TTTTTGTTGG GCCTCTTTAT TTAGAACCTG GCGGACGAGG AGCCCTGGGC AGTTGGTATG
  GGCAGTACAG GAACCATTTC GACTGTCTGG TCACCAAGTT TAAGAGCAAT CTAATGAAGT
  R
  GGGGACACTG TAAGCTAACT GAAGATGAAT GTGTGGGGGC TTTTACTCAA CAACCATTCC
  CCTAGAGTCT AATATAAAAG TAGATTTACA TTTGTGGGTA ATCTGAAGCT GGTGATTTCT
  AGTGCCTTTG GTAATAATCA ATAACCCAGC AGTTGCGTGG CAGAGGGATC CACGCATGGA
  TAAATACAAA TATTAAATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322476120	CHEV_7_150644367	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228106335					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:143012199 () rs orientation: forward

Symbol	Name	Function Class
Cdkn1c	cyclin dependent kinase inhibitor 1C	within coordinates
Cpgi19981	CpG island 19981	387 bp proximal
Gm44732	predicted gene 44732	1287 bp upstream
Rr658423	regulatory region 658423	797 bp proximal
Rr658424	regulatory region 658424	1837 bp proximal
Rr658425	regulatory region 658425	1951 bp proximal
Tssr70288	transcription start site region 70288	237 bp upstream
Tssr70289	transcription start site region 70289	1390 bp upstream
Tssr75936	transcription start site region 75936	28 bp downstream
Tssr75937	transcription start site region 75937	117 bp downstream
Tssr75938	transcription start site region 75938	310 bp downstream
Tssr75939	transcription start site region 75939	342 bp downstream
Tssr75940	transcription start site region 75940	361 bp downstream
Tssr75941	transcription start site region 75941	474 bp downstream
Tssr75942	transcription start site region 75942	872 bp downstream
Tssr75943	transcription start site region 75943	919 bp downstream
Tssr75944	transcription start site region 75944	1774 bp downstream