rs228111146 SNP Detail

Summary

• ID
  rs228111146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14930391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCACAGC ACCTACTAGG
  TAGAGCTGCT GCCAGCCCTT TTAACCGGGG AAACAAAGGA TTTGGGCGCC TGCTCCAGAG
  CTTGGGTCAC AGACAGGGCT TTCCTCAGAC CCAGCCTCTC CCACCGCGTC GGCCTCCCTC
  ACAGAGGCGG GCTGGCTCGC ACCCCACCGG TCCGCTCCAC CACGCCGCGC AGACCGGCTG
  Y
  CTAGCGGTCC CGCGAGGAAG GAGCTCGGAG CTCGGAGTCC GAGGCGGTTC ACCCGGGCGC
  CCCGTCGAGG GCGAGCTCGC CCGTGCGCCC CGCCCCGCCC CGCCCCCCCG GAGGTCGCCG
  CCCGCCGTGC GCGCGCCTCG CTCGCCGCCC CTGGCCCCCG GCCCGACGCT CGCGCGCCGC
  CGGTTTAACG GTCCTGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360674730	MGP_WTSI_4_14857538	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228111146					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360674730	MGP_WTSI_4_14857538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14930391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	within coordinates
Gm11837	predicted gene 11837	within coordinates
Gm68732	predicted gene, 68732	within coordinates
Rr589248	regulatory region 589248	530 bp distal
Rr589249	regulatory region 589249	within coordinates
Rr589250	regulatory region 589250	59 bp proximal
Rr589251	regulatory region 589251	296 bp proximal
Tssr36545	transcription start site region 36545	520 bp downstream
Tssr36546	transcription start site region 36546	228 bp upstream
Tssr36547	transcription start site region 36547	318 bp upstream