rs228111449 SNP Detail

Summary

• ID
  rs228111449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72538748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGCCCT CTCACCCATT
  CCCCTCAACC TTTGAAATTT AACATTCATC AACCATGTCC ACTCAGAGAC TCCCTATAAA
  TCTTTCTTCT TGCTCATCCT GAAACTCAGA TGTTTTTGGC AAGAGGGGCT AGGAAAGATG
  GATAGAGCAC ACTGCCACCG CCATTGTTCC ATCCAGGCAT GTGTTCCTCC TCTTCCTTGC
  Y
  CATGTCTGAC TTCCAGCTCT CCTGGGCTCT GCTTGCTGCC CTTATCCTCT GGTGTTCTCT
  CTTCAACAAG TTCACTACCT GTCAATCCCA GCTACAACCT GGCTGTACTA ACTCCTGGAT
  CTTTCCCTCT CTCCAACCCT GTTATGCTTC CTGACACTTT TCTTCCTTCT GGAGTTATTG
  ACCTGTCCCC TTCCATCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771591	MGP_WTSI_X_70740481	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228111449					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771591	MGP_WTSI_X_70740481	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72538748 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	1148 bp distal
Rr6090	regulatory region 6090	1748 bp distal
Rr7747	regulatory region 7747	11 bp distal
Rr10758	regulatory region 10758	1221 bp distal
Tssr5633	transcription start site region 5633	1865 bp downstream
Tssr5634	transcription start site region 5634	421 bp upstream
Tssr5635	transcription start site region 5635	78 bp upstream
Tssr161225	transcription start site region 161225	1928 bp downstream
Tssr161226	transcription start site region 161226	1877 bp downstream
Tssr161227	transcription start site region 161227	1827 bp downstream
Tssr161228	transcription start site region 161228	533 bp downstream
Tssr161229	transcription start site region 161229	500 bp downstream
Tssr161230	transcription start site region 161230	476 bp downstream
Tssr161231	transcription start site region 161231	451 bp downstream
Tssr161232	transcription start site region 161232	406 bp downstream
Tssr161233	transcription start site region 161233	332 bp downstream
Tssr161234	transcription start site region 161234	308 bp downstream
Tssr161235	transcription start site region 161235	226 bp downstream
Tssr161236	transcription start site region 161236	179 bp downstream
Tssr161237	transcription start site region 161237	154 bp downstream
Tssr161238	transcription start site region 161238	118 bp downstream
Tssr161239	transcription start site region 161239	67 bp downstream
Tssr161240	transcription start site region 161240	33 bp downstream
Tssr161241	transcription start site region 161241	10 bp downstream
Tssr161242	transcription start site region 161242	3 bp upstream
Tssr161243	transcription start site region 161243	167 bp upstream
Tssr161244	transcription start site region 161244	191 bp upstream
Tssr161245	transcription start site region 161245	286 bp upstream
Tssr161246	transcription start site region 161246	442 bp upstream
Tssr161247	transcription start site region 161247	465 bp upstream
Tssr161248	transcription start site region 161248	734 bp upstream
Tssr163547	transcription start site region 163547	465 bp upstream
Tssr163548	transcription start site region 163548	393 bp upstream
Tssr163549	transcription start site region 163549	327 bp upstream
Tssr163550	transcription start site region 163550	264 bp upstream
Tssr163551	transcription start site region 163551	106 bp upstream
Tssr163552	transcription start site region 163552	44 bp upstream
Tssr163553	transcription start site region 163553	11 bp downstream
Tssr163554	transcription start site region 163554	30 bp downstream
Tssr163555	transcription start site region 163555	57 bp downstream