rs228117256 SNP Detail

Summary

• ID
  rs228117256
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89731478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCGTGAG TCAGAAAACC
  TAGAAATATC CCAAGGAGAA GGGACAACTA AGAACATAAG CAAAATTAAA TTAAAACTAC
  TGTGAATTTC CATCTCACCT CAGCCTAAAT GGCTACCATT ATTTAAAAAA AAATAGCAAA
  TGCTTTTGAG GGAAAATGGG GTGGGGTTGG TGGACCCTTA TACAGTACTG GTGCCACTGT
  K
  AATTGGTACA GTCACTGTGG AAATCAGTAC AAAGGATCCT TTAAAAAAAC GTAAAGCCGG
  GCGTGGTGGC GCACGCCTTT AATCCCAGCT CTCGGGAGGC AGAGGCAGGT GGATTTCTGA
  GTTCGAGGCC AACCTGGTCT ACAAAGTGAG TTCCAGGACA GCCAGGGCTA CACAGAGAAA
  CCCTGTCTCG AAAAAGAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375503418	MGP_WTSI_8_91528749	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228117256					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375503418	MGP_WTSI_8_91528749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89731478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20796	CpG island 20796	1584 bp proximal
Gm56831	predicted gene, 56831	932 bp downstream
Rr1386	regulatory region 1386	153 bp distal
Rr190948	regulatory region 190948	1878 bp distal
Rr366841	regulatory region 366841	within coordinates
Rr406251	regulatory region 406251	969 bp proximal
Tssr78676	transcription start site region 78676	987 bp downstream
Tssr82368	transcription start site region 82368	1762 bp downstream
Tssr82369	transcription start site region 82369	1790 bp downstream
Tssr82370	transcription start site region 82370	1809 bp downstream
Tssr82371	transcription start site region 82371	1821 bp downstream
Tssr82372	transcription start site region 82372	1847 bp downstream