rs228121675 SNP Detail

Summary

• ID
  rs228121675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88191580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGTAGAGA CCTGGTCCCC
  TCTCCAAGTA ATTTATAGCT GACATAGAAA GAAACAGAAA ATGAAGCCAT TTAGTGTTTA
  ATGTGGCTCA AGATGGAACT AGAGAAGGCA TCTGGTAAAG GCCCTAAGGA TAGGCTAGTA
  ACTTCCAGGG GAGTGGTGAG GAACTCCTGG GTACCAGGGA AGAAGCTCTA GGCACTATGA
  Y
  TGCCACTAAC CAGCAACTTG ATTCTATTCT CTGCAAAGTC GAAGTCCCTG CTAGTAGTTG
  GGCAAGCGAG GTCTCCGGGC TGCAGGAAAA GCAAGGTTTT CTCCAGGTAG AGTGCCAGGC
  AGGTGGGACT TCAAAGGCAG GGCACGCTGC ACACATATAA CCCCAGCTTC TTAGGAAGGC
  TGAGGCAGGA GGACCACAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/1J	FVB/NJ	RF/J	SPRET/EiJ	ZALENDE/EiJ
ss350399202	MGP_WTSI_1_90160433	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/1J	FVB/NJ	RF/J	SPRET/EiJ	ZALENDE/EiJ
rs228121675					SNP	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350399202	MGP_WTSI_1_90160433	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88191580 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Mroh2a	maestro heat-like repeat family member 2A	1569 bp downstream
Rr18062	regulatory region 18062	1780 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	960 bp downstream