rs228125339 SNP Detail

Summary

• ID
  rs228125339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8898203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGCTCG GTGAGCGGGG
  CGGGGCGGGG CGGTGTGCGG AGGGCCGGCC CAAGGCGCTG GGGATGAGAC CCGCAGACAG
  CGGCTTCCCG CTCGCTCAGC CCTCGGGACA GCCCTCGGTG ACCCCTTGTG TAGAACTCTC
  GGCAGTCTGC AACTCCGCGG ATACCGGTCA AGCCCCAAAT GACCCCGCCG CCGCCAAGCA
  R
  CCTATTTTCC ACCCTCCCCT TGCTCTGCCT CTCAGACCGG CTTGCTGATA GGTTTTTGAG
  AACCCCCTGG TTCATTGTCC CCTCCAGCTT TTGACCAGCT GTGCTCTCCC CACCTCCAGG
  CCATCTATTT CTCATCCTGG TTTTAGGCCA GATGTCACAT CAGGACTTCC CTGACCACCT
  TAGCTCAAGT AACCCTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401710302	MGP_WTSI_19_8995329	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228125339					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401710302	MGP_WTSI_19_8995329	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8898203 () rs orientation: forward

Symbol	Name	Function Class
B3gat3	beta-1,3-glucuronyltransferase 3	within coordinates
Cpgi10585	CpG island 10585	within coordinates
Gm36629	predicted gene, 36629	within coordinates
Rr543846	regulatory region 543846	1207 bp distal
Rr543847	regulatory region 543847	455 bp distal
Rr543848	regulatory region 543848	within coordinates
Tssr154878	transcription start site region 154878	413 bp downstream
Tssr154879	transcription start site region 154879	393 bp downstream
Tssr154880	transcription start site region 154880	366 bp downstream
Tssr154881	transcription start site region 154881	264 bp downstream
Tssr154882	transcription start site region 154882	1218 bp upstream
Tssr154883	transcription start site region 154883	1285 bp upstream
Tssr158078	transcription start site region 158078	1004 bp downstream