rs228132997 SNP Detail

Summary

• ID
  rs228132997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCCAAGA ACAGAGACAC
  GAGAGGCAGA GACAGTCAGA TCCCTAGGAG CACACAGGCC GGCTTGGTCC ACGGTGTGAA
  TTTCTGCACT GTGTTAGTTA TTGTTTGGTT GCTGTGAGAA AACATCTTAA CAAAAGCAAC
  TCAGCAAAGG AAGGGTCCAT TTTGGCTTGT AGCGTCGGGG ATACACTCCA TCCTGGAGGG
  R
  ACACATGGTG GCCAGAGGCA GCTGTACATT GCATGCTCAG TCAGGAAGCT AAGAGATACA
  CGCAGCCTCT GGGTTCTCTT TGTCCTTTTG ATATAGCTAG GGATTTTGGC CCACGGAATG
  TTACTGCCCA TAGGTCAGGG TGGATCTTCT TACACCAAAG AACTGAGTCC AGATAGTCTC
  TCATTCATGT TCCTATAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325408113	CHEV_17_48487350	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228132997					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655053 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1853 bp distal
Rr335234	regulatory region 335234	1052 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1608 bp downstream
Tssr145094	transcription start site region 145094	1580 bp downstream
Tssr145095	transcription start site region 145095	1532 bp downstream
Tssr145096	transcription start site region 145096	1499 bp downstream
Tssr145097	transcription start site region 145097	494 bp downstream
Tssr145098	transcription start site region 145098	152 bp downstream
Tssr145099	transcription start site region 145099	455 bp upstream
Tssr145100	transcription start site region 145100	484 bp upstream
Tssr145101	transcription start site region 145101	521 bp upstream
Tssr145102	transcription start site region 145102	620 bp upstream
Tssr148525	transcription start site region 148525	665 bp downstream