rs228134586 SNP Detail

Summary

• ID
  rs228134586
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:91861434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGGGGAT TGATGTGCAT
  TAGGTTCCAT TCCCATAACC AAAAAAAAGA CAACCCTGAT TTACAACCAG CCATTAAACA
  CATTAGCGTA TCAAAGAACG TGTCTCTAAC GGATACAAGC ATCCTGAAGT TCTGGCCTGA
  CATAAAGCCC CGTTTCTCTG GAGAAAAGCA TAATTCTGCC CAGTGGCCAA GATGACCCTC
  K
  GTAACGACTA TTATCGAACA ACACTGATGT ACTTAAGAAA TAATTCTGGC GCCGGGCAGT
  GGTGGCGCGC ACGCCTTTAA TCCCAGCACT TGGTAGGCAG TGGTAGGCAG ATTTCCGAGT
  TCTAGGCCAG CCTGGTCTAC AGAGTTCCAG GACAGCCAGG GCTACACAGA AAAACCCTGT
  CTTGAACCCC CCCCCCCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375558958	MGP_WTSI_8_93658705	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs228134586					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375558958	MGP_WTSI_8_93658705	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:91861434 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aktip	AKT interacting protein			Intron
				Noncoding-Transcript-Variant
Cpgi20808	CpG island 20808			326 bp distal
Gm63829	predicted gene, 63829			700 bp downstream
Rr368579	regulatory region 368579			423 bp downstream
Rr667489	regulatory region 667489			820 bp distal
Rr667490	regulatory region 667490			within coordinates
Rr667491	regulatory region 667491			466 bp proximal
Rr667492	regulatory region 667492			876 bp proximal
Tssr82405	transcription start site region 82405			784 bp upstream
Tssr82406	transcription start site region 82406			768 bp upstream
Tssr82407	transcription start site region 82407			853 bp downstream
Tssr82408	transcription start site region 82408			881 bp downstream
Tssr82409	transcription start site region 82409			896 bp downstream