rs228135896 SNP Detail

Summary

• ID
  rs228135896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117548292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAGAAA GGTAATTTCG
  TTCTTTGGGG CTTGCCACTT CTTACTGACA GCCTTCATTT CCCCAACAGT TCGTGATTAA
  GGACTTTTCA GAAACCTTTC TCCCCTTAGG AATGGAGTGA ATATTCATTT TAAATTTAAT
  AACCTTCAGC CAGGCATGGT GGCATAGACC TTTGACCCCT GCAGTAGAGA CGAAGAGACA
  R
  GTGAGTTCAA GATAGTGTGT CCACGAGTCC ACACAGTGAG CTGCAGATCA GCCAGGGCTG
  CACACAGAGA ACCTGTCTCA CAGAACCCAA GCCTTGGGAG ATGAAGTAGC CCAATTGGGC
  TTGTGTGCAG TTTCATGGGA TTGGGGCATG AGCAGGATGG GGGGATGGGA GGACAGGGCA
  AAAGGCAAGC AGGCATGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323498903	CHEV_10_117149443	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs228135896					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117548292 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	1279 bp distal
Gm56970	predicted gene, 56970	854 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1629 bp upstream
Rr212986	regulatory region 212986	1509 bp proximal
Rr224309	regulatory region 224309	691 bp distal
Rr385357	regulatory region 385357	within coordinates
Tssr95923	transcription start site region 95923	1440 bp downstream
Tssr95924	transcription start site region 95924	631 bp downstream
Tssr99467	transcription start site region 99467	1726 bp upstream
Tssr99468	transcription start site region 99468	1651 bp upstream
Tssr99469	transcription start site region 99469	1614 bp upstream